PanTools
v4.3.1

Getting Started

  • Install
  • Differences between pangenome and panproteome
  • Workflows for pangenomics
  • Genome and sequence selection
  • Querying the pangenome

Pangenome Construction

  • Build a pangenome or panproteome
  • Annotate the pangenome graph
  • Grouping proteins
  • Synteny

Pangenome Analysis

  • BLAST
  • Classification
  • Explore the pangenome
  • Gene retention
  • GO enrichment
  • Metrics
  • Multiple Sequence Alignments
  • Phylogeny
  • Read mapping
  • Sequence visualization
  • Support functions
  • Synonymous and non-synonymous substitutions

Tutorial

  • Tutorial 1 - Install PanTools
  • Tutorial 2 - Construct pangenome
  • Tutorial 3 - Neo4j browser
  • Tutorial 4 - Characterization
  • Tutorial 5 - Phylogeny

Developer guide

  • Installation
  • Release steps
  • Database structure
PanTools
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